Package: RadOnc 1.1.8

RadOnc: Analytical Tools for Radiation Oncology

Designed for the import, analysis, and visualization of dosimetric and volumetric data in Radiation Oncology, the tools herein enable import of dose-volume histogram information from multiple treatment planning system platforms and 3D structural representations and dosimetric information from 'DICOM-RT' files. These tools also enable subsequent visualization and statistical analysis of these data.

Authors:Reid F. Thompson <[email protected]>

RadOnc_1.1.8.tar.gz
RadOnc_1.1.8.zip(r-4.5)RadOnc_1.1.8.zip(r-4.4)RadOnc_1.1.8.zip(r-4.3)
RadOnc_1.1.8.tgz(r-4.4-any)RadOnc_1.1.8.tgz(r-4.3-any)
RadOnc_1.1.8.tar.gz(r-4.5-noble)RadOnc_1.1.8.tar.gz(r-4.4-noble)
RadOnc_1.1.8.tgz(r-4.4-emscripten)RadOnc_1.1.8.tgz(r-4.3-emscripten)
RadOnc.pdf |RadOnc.html✨
RadOnc/json (API)
NEWS

# Install 'RadOnc' in R:
install.packages('RadOnc', repos = c('https://reidt03.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • cord - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
  • janedoe - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
  • janedoe.RTdata - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
  • johndoe - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
  • mandible - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
  • stomach - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
  • teeth - DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.18 score 8 stars 19 scripts 285 downloads 22 exports 8 dependencies

Last updated 2 years agofrom:8ec2b6ef27. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:as.listcalculate.DVHcompareStructuresget.HUgEUDlapplyLQEmadmeanmedianplotprintquantileread.DICOM.RTread.DVHrevsdshowsubsett.testvarwilcox.test

Dependencies:abindbitopsmisc3doro.dicomoro.niftiptinpolyRcppRNifti

Documentation

Rendered fromRadOnc.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2022-05-19
Started: 2013-07-07

Readme and manuals

Help Manual

Help pageTopics
Analytical Tools for Radiation OncologyRadOnc-package RadOnc
Calculate DVH data for one or more structure(s) using a dose gridcalculate.DVH calculate.DVH,ANY,ANY-method calculate.DVH,ANY,array-method calculate.DVH,ANY,missing-method calculate.DVH,RTdata,array-method calculate.DVH,RTdata,missing-method calculate.DVH,structure.list,array-method calculate.DVH,structure3D,array-method calculate.DVH-methods
Compare Axially-Defined Three-Dimensional StructurescompareStructures compareStructures.axial compareStructures.EMD compareStructures.grid compareStructures.hausdorff compareStructures.surface
Class '"DVH"'$,DVH-method $<-,DVH-method c,DVH-method DVH DVH-class initialize,DVH-method lines,DVH-method max,DVH-method mean,DVH-method min,DVH-method names,DVH-method names<-,DVH-method plot,DVH-method points,DVH-method print,DVH-method range,DVH-method show,DVH-method sum,DVH-method [,DVH-method
Class '"DVH.list"'$,DVH.list-method as.list,DVH.list-method c,DVH.list-method DVH.list DVH.list-class initialize,DVH.list-method lapply,DVH.list-method length,DVH.list-method mad,DVH.list-method max,DVH.list-method mean,DVH.list-method median,DVH.list-method min,DVH.list-method names,DVH.list-method names<-,DVH.list-method plot,DVH.list-method print,DVH.list-method quantile,DVH.list-method range,DVH.list-method rev,DVH.list-method sd,DVH.list-method show,DVH.list-method sum,DVH.list-method t.test,DVH.list-method var,DVH.list-method wilcox.test,DVH.list-method [,DVH.list-method [[,DVH.list-method [[<-,DVH.list-method
Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT imageget.HU get.HU,ANY,ANY-method get.HU,ANY,array-method get.HU,ANY,missing-method get.HU,list,array-method get.HU,RTdata,missing-method get.HU,structure.list,array-method get.HU,structure3D,array-method get.HU-methods
Generalized Equivalent Uniform Dose (gEUD) CalculationgEUD gEUD,ANY,missing-method gEUD,DVH,numeric-method gEUD,DVH.list,numeric-method gEUD-methods
Linear Quadratic Extrapolated (LQE) Dose ConversionLQE LQE,ANY,missing-method LQE,DVH,numeric-method LQE,DVH.list,numeric-method LQE,numeric,numeric-method LQE-methods
Additional Methods for Function 'plot' in Package 'graphics'plot,ANY,ANY-method plot,DVH,ANY-method plot,DVH,DVH-method plot,DVH,missing-method plot,DVH,zDVH-method plot,DVH.list,ANY-method plot,DVH.list,missing-method plot,zDVH,ANY-method plot,zDVH,DVH-method plot,zDVH,missing-method plot,zDVH,zDVH-method plot-methods plot.DVH plot.DVH.list plot.zDVH
DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'cord janedoe janedoe.RTdata johndoe mandible RadOnc-data stomach teeth
Read DICOM-RT data from an input directoryread.DICOM.RT
Read DVH data from input fileread.DVH
Class '"RTdata"'$,RTdata-method $<-,RTdata-method names,RTdata-method names<-,RTdata-method print,RTdata-method RTdata-class show,RTdata-method
Class '"structure.list"'$,structure.list-method as.list,structure.list-method c,structure.list-method initialize,structure.list-method lapply,structure.list-method length,structure.list-method names,structure.list-method names<-,structure.list-method print,structure.list-method range,structure.list-method rev,structure.list-method show,structure.list-method structure.list-class [,structure.list-method [[,structure.list-method [[<-,structure.list-method
Class '"structure3D"'$,structure3D-method $<-,structure3D-method c,structure3D-method dim,structure3D-method names,structure3D-method names<-,structure3D-method print,structure3D-method range,structure3D-method show,structure3D-method structure3D-class
Extract a subset of a larger DVH listsubset,DVH-method subset,DVH.list-method subset-methods subset.DVH.list
Class '"zDVH"'$,zDVH-method $<-,zDVH-method c,zDVH-method initialize,zDVH-method max,zDVH-method mean,zDVH-method min,zDVH-method names,zDVH-method names<-,zDVH-method print,zDVH-method show,zDVH-method zDVH zDVH-class [,zDVH-method